Bay-Delta SELFE Tools

Index

A | B | C | D | E | F | G | I | L | M | N | O | P | R | S | T | U | V | W

A

add_boundary() (selfe_mesh.SelfeMesh method)
(trimesh.TriMesh method)
add_structure() (selfe_input.SelfeInput method)
addnode() (in module sms2gr3)
adopt_new_mesh() (selfe_utility.SelfeUtility method)
agency() (obs_links.ObsLinks method)
alias() (station_db.StationDB method)
allocate() (trimesh.TriMesh method)
analyze() (in module subcycle_analyzer)
attribute (polygons.Polygon attribute)

B

base_io (module)
BaseIO (class in base_io)
bilinear() (in module stacked_dem_fill)
boundaries (selfe_mesh.SelfeMesh attribute)
Boundary (class in sms2gr3)
BoundaryTypes (in module trimesh)
bounding_coords() (in module clip_dems)
box() (polygons.Polygon method)
btype (selfe_mesh.SelfeBoundary attribute)
build_edgecenters() (trimesh.TriMesh method)
build_edges_from_elems() (trimesh.TriMesh method)

C

cal_distance() (in module grid_opt)
cal_length() (in module grid_opt)
cal_tri_area() (in module grid_opt)
cal_z_ref() (in module grid_opt)
cdec_download (module)
cdec_download() (in module cdec_download)
cfs_to_cms() (in module unit_conversions)
check_point_inside_polygon() (polygons.Polygon method)
clear_boundary() (selfe_mesh.SelfeMesh method)
clear_structures() (selfe_input.SelfeInput method)
clip() (in module model_time)
clip_dem() (in module clip_dems)
clip_dems (module)
cms_to_cfs() (in module unit_conversions)
collect_nodes_to_remove() (in module remove_bad_tvd_cells)
comment (selfe_mesh.SelfeBoundary attribute)
(selfe_mesh.SelfeMesh attribute)
construct_A_and_b() (in module grid_opt)
convert_2dm() (in module sms2gr3)
coord (selfe_source.SelfeSource attribute)
coords (selfe_structure.SelfeStructure attribute)
creart_sources_from_user_input() (selfe_utility.SelfeUtility method)
create_arg_parser() (in module cdec_download)
(in module clip_dems)
(in module dicu_selfe)
(in module gen_elev2D)
(in module grid_opt)
(in module material_poly)
(in module model_time)
(in module prepare_selfe)
(in module selfe_timing)
(in module separate_species)
(in module sms2gr3)
(in module stacked_dem_fill)
(in module subcycle_analyzer)
(in module subparser)
create_boundaries() (selfe_mesh.SelfeMesh method)
create_driver() (in module grid_opt)
create_element_shapefile() (in module grid_opt)
create_face_shapefile() (in module grid_opt)
create_flux_regions() (selfe_utility.SelfeUtility method)
create_fluxflag() (in module prepare_selfe)
create_gr3_with_constant() (in module prepare_selfe)
create_gr3_with_polygons() (in module prepare_selfe)
create_hgrid() (in module prepare_selfe)
create_node_partitioning() (selfe_utility.SelfeUtility method)
create_node_shapefile() (in module grid_opt)
create_open_boundaries() (selfe_utility.SelfeUtility method)
create_partial_domain() (in module grid_opt)
create_point_shapefile() (in module grid_opt)
create_poly() (in module material_poly)
create_prop_partitioning() (selfe_utility.SelfeUtility method)
create_prop_with_polygons() (in module prepare_selfe)
create_ref_surf() (in module grid_opt)
create_source_sink() (in module prepare_selfe)
create_source_sink_in() (selfe_utility.SelfeUtility method)
create_structures() (in module prepare_selfe)
(selfe_utility.SelfeUtility method)
cut_mesh (module)
cut_mesh() (in module cut_mesh)

D

datum_adjust() (obs_links.ObsLinks method)
deepcopy() (trimesh.TriMesh method)
depth_opt() (in module grid_opt)
describe_elapsed() (in module model_time)
describe_timestamps() (in module model_time)
dict_constructor() (in module prepare_selfe)
dict_representer() (in module prepare_selfe)
dicu_selfe (module)

E

ec_psu_25c() (in module unit_conversions)
edges (trimesh.TriMesh attribute)
EdgeTypes (in module trimesh)
element2edges() (trimesh.TriMesh method)
element_id (selfe_source.SelfeSource attribute)
elems (trimesh.TriMesh attribute)
enum() (in module trimesh)
error_detect (module)
error_detect_fix (module)
expand() (in module expand_th)
expand_dicu() (in module dicu_selfe)
expand_th (module)

F

file_to_elapsed() (in module model_time)
file_to_timestamp() (in module model_time)
filelist_main() (in module stacked_dem_fill)
filename() (obs_links.ObsLinks method)
fill_2dm() (in module stacked_dem_fill)
fill_gr3() (in module stacked_dem_fill)
fill_land_and_island_boundarise() (selfe_mesh.SelfeMesh method)
find_closest_elems() (trimesh.TriMesh method)
find_closest_nodes() (trimesh.TriMesh method)
find_elem() (trimesh.TriMesh method)
find_elem_with_tolerance() (trimesh.TriMesh method)
find_nodes_in_box() (trimesh.TriMesh method)
find_two_neighboring_paths() (selfe_mesh.SelfeMesh method)
flow_extractor() (in module station_extractor)
fprime() (in module grid_opt)
ft_to_m() (in module unit_conversions)

G

gen_elev2D (module)
get_bad_elements() (in module remove_bad_tvd_cells)
get_closest_node_i_from_new_mesh() (selfe_utility.SelfeUtility method)
get_dicu_nodes() (in module dicu_selfe)
get_edges_from_node() (trimesh.TriMesh method)
get_elems_i_from_node() (trimesh.TriMesh method)
get_land_boundary() (in module prepare_selfe)
get_neighbor_nodes() (trimesh.TriMesh method)
get_number_of_processors_used() (in module remove_bad_tvd_cells)
gr3 (module)
Gr3IO (class in gr3)
grid_opt (module)
grid_opt() (in module grid_opt)

I

input (selfe_utility.SelfeUtility attribute)
InputParser (class in InputParser)
(module)
interpolate_tide() (selfe_utility.SelfeUtility method)
is_elem_on_boundary() (trimesh.TriMesh method)
item() (obs_links.ObsLinks method)
item2d() (obs_links.ObsLinks method)
item_exist() (in module prepare_selfe)

L

linecounter (base_io.BaseIO attribute)
load() (selfe_utility.SelfeUtility method)
load_gr3() (in module selfe_utility)
load_selfe() (in module selfe_utility)

M

m_to_ft() (in module unit_conversions)
main() (in module gen_elev2D)
(in module grid_opt)
(in module model_time)
(in module prepare_bayonly)
(in module prepare_selfe)
(in module remove_bad_tvd_cells)
(in module separate_species)
(in module subcycle_analyzer)
material_poly (module)
med_outliers() (in module error_detect)
(in module error_detect_fix)
mesh (selfe_input.SelfeInput attribute)
(selfe_utility.SelfeUtility attribute)
model_time (module)
modify_depth() (selfe_utility.SelfeUtility method)

N

n_boundaries() (selfe_mesh.SelfeMesh method)
n_boundary_nodes() (selfe_mesh.SelfeMesh method)
n_duplicate (selfe_structure.SelfeStructure attribute)
n_edges() (trimesh.TriMesh method)
n_elems() (trimesh.TriMesh method)
n_node_pairs() (selfe_structure.SelfeStructure method)
n_nodes() (selfe_mesh.SelfeBoundary method)
(trimesh.TriMesh method)
n_sinks() (selfe_input.SelfeInput method)
n_sources() (selfe_input.SelfeInput method)
n_structures() (selfe_input.SelfeInput method)
n_vertices() (polygons.Polygon method)
name (polygons.Polygon attribute)
(selfe_structure.SelfeStructure attribute)
name() (station_db.StationDB method)
noaa_download (module)
node_pairs (selfe_structure.SelfeStructure attribute)
nodes (selfe_mesh.SelfeBoundary attribute)
(trimesh.TriMesh attribute)
note (selfe_source.SelfeSource attribute)
nudging (selfe_input.SelfeInput attribute)

O

obj_func() (in module grid_opt)
obs_links (module)
ObsLinks (class in obs_links)
opt_parm_check() (in module grid_opt)

P

ParseType() (in module stacked_dem_fill)
path() (obs_links.ObsLinks method)
plot_default_formats (module)
plot_result() (in module separate_species)
point_inside_polygon() (in module grid_opt)
Polygon (class in polygons)
PolygonIO (class in polygons)
polygons (module)
prepare_bayonly (module)
prepare_selfe (module)
priority_queue (module)
priorityDictionary (class in priority_queue)
process_station_list() (in module cdec_download)
properties (selfe_structure.SelfeStructure attribute)
psu_ec_25c() (in module unit_conversions)
psu_ec_25c_scalar() (in module unit_conversions)
psu_ec_resid() (in module unit_conversions)

R

read() (gr3.Gr3IO method)
(InputParser.InputParser method)
(polygons.PolygonIO method)
(selfe_source.SelfeSourceIO method)
(selfe_structure.SelfeStructureIO method)
read_2dm() (in module grid_opt)
read_boundary_node_csv() (in module grid_opt)
read_cdec() (in module read_ts)
read_depth_avg_from_output7b_xyt() (in module read_output_xyt)
read_gr3() (in module grid_opt)
read_keyfile() (in module material_poly)
read_lines() (in module cut_mesh)
read_lines_from_shapefile() (in module cut_mesh)
read_noaa() (in module read_ts)
read_opt_parm() (in module grid_opt)
read_output_xyt (module)
read_ts (module)
read_ts() (in module read_ts)
read_usgs() (in module read_ts)
read_wdl() (in module read_ts)
reference_pair (selfe_structure.SelfeStructure attribute)
remove_bad_tvd_cells (module)
remove_nodes() (in module remove_bad_tvd_cells)
reorder_open_boundaries() (selfe_utility.SelfeUtility method)
retrieve_csv() (in module noaa_download)
retrieve_data() (in module noaa_download)
retrieve_table() (in module noaa_download)
run_example() (in module separate_species)

S

selfe_input (module)
selfe_mesh (module)
selfe_source (module)
selfe_structure (module)
selfe_timing (module)
selfe_timing() (in module selfe_timing)
selfe_utility (module)
SelfeBoundary (class in selfe_mesh)
SelfeInput (class in selfe_input)
SelfeMesh (class in selfe_mesh)
SelfeSource (class in selfe_source)
SelfeSourceIO (class in selfe_source)
SelfeStructure (class in selfe_structure)
SelfeStructureIO (class in selfe_structure)
SelfeUtility (class in selfe_utility)
separate_species (module)
separate_species() (in module separate_species)
set_color_cycle_dark2() (in module plot_default_formats)
set_dual_axes() (in module plot_default_formats)
set_elem() (trimesh.TriMesh method)
set_elev_dual_axes() (in module plot_default_formats)
set_node() (trimesh.TriMesh method)
set_salt_dual_axes() (in module plot_default_formats)
setdefault() (priority_queue.priorityDictionary method)
shortest_path() (trimesh.TriMesh method)
smallest() (priority_queue.priorityDictionary method)
sms2gr3 (module)
sources (selfe_input.SelfeInput attribute)
stacked_dem_fill (module)
stacked_dem_fill() (in module stacked_dem_fill)
station_attribute() (station_db.StationDB method)
station_db (module)
station_extractor (module)
station_extractor() (in module station_extractor)
station_ids_from_alias() (station_db.StationDB method)
StationDB (class in station_db)
stations_for_variable() (obs_links.ObsLinks method)
structures (selfe_input.SelfeInput attribute)
subcycle_analyzer (module)
subparser (module)
substitute() (in module prepare_selfe)

T

test_main() (in module stacked_dem_fill)
time_start (selfe_input.SelfeInput attribute)
time_zone() (obs_links.ObsLinks method)
to_datetime() (in module model_time)
to_elapsed() (in module model_time)
trim_to_left() (trimesh.TriMesh method)
trim_to_left_of_mesh() (selfe_utility.SelfeUtility method)
TriMesh (class in trimesh)
trimesh (module)
type (polygons.Polygon attribute)
(selfe_source.SelfeSource attribute)
(selfe_structure.SelfeStructure attribute)

U

unit() (obs_links.ObsLinks method)
unit_conversions (module)
update_spatial_inputs() (in module prepare_bayonly)
(in module prepare_selfe)
update_temporal_inputs() (in module prepare_bayonly)
(in module prepare_selfe)
Usage() (in module stacked_dem_fill)
use_timeseries (selfe_structure.SelfeStructure attribute)

V

vdatum() (obs_links.ObsLinks method)
verbose (base_io.BaseIO attribute)
vertices (polygons.Polygon attribute)

W

write() (gr3.Gr3IO method)
(InputParser.InputParser method)
(selfe_source.SelfeSourceIO method)
(selfe_structure.SelfeStructureIO method)
(selfe_utility.SelfeUtility method)
write_fluxregions() (selfe_utility.SelfeUtility method)
write_gr3() (in module grid_opt)
write_header() (in module noaa_download)
write_hgrid() (selfe_utility.SelfeUtility method)
write_hgrid_ll() (selfe_utility.SelfeUtility method)
write_structures() (selfe_utility.SelfeUtility method)
write_table() (in module noaa_download)
write_th() (in module separate_species)